AppleGFDB:The Apple Gene Function & Gene Family DataBase v1.0
Locus Search:

 

miR319c

miR319c  

Mature Sequence:5'-TTGGACTGAAGGGAGCTCCTT-3'

Precursor Sequence:

CTTCTTCAGTCCAGTCCTTGGCAGTTTAAGGGCTGGCACTCAGCTGCTGACTCGTTGGTT
CAAAAACTCATCATACATTTGCTAAAAGAAGTGGTGTTTTTCTGATCCAACGAAGCAGGA
GCCGAGAGGTTGGTTATTGCTGTCACGTCTTGGACTGAAGGGAGCTCCTTACCTATAATT
ATTCATTCCACAACTTCAAATTTATTTTCTTGGTAAAAAGA

Genome Location:Chr13:1867818..1867798
Precursor Coordinates:51..272
MFE:-75.76
MFEI:0.81
GC:42.08
Plant Homologs:

aly-miR319d;aly-miR319c;ath-miR319c;pvu-miR319c;gma-miR4414;rco-miR319d;

Structure:
Target:MDP0000186465 
Target Start:377 
Target End:396 
miRNA Aligned Fragment:5'-CUUGGACUGAAGGGAGCUCC-3' 
Target Aligned Fragment:3'- GGAUCUGACUUCCCUCGACA -5' 
Inhibition Type:Cleavage 
MDP0000186465 
Target:MDP0000216976 
Target Start:422 
Target End:441 
miRNA Aligned Fragment:5'-CUUGGACUGAAGGGAGCUCC-3' 
Target Aligned Fragment:3'- GGAUCUGACUUCCCUCGACA -5' 
Inhibition Type:Cleavage 
MDP0000216976 
Target:MDP0000253886 
Target Start:723 
Target End:742 
miRNA Aligned Fragment:5'-CUUGGACUGAAGGGAGCUCC-3' 
Target Aligned Fragment:3'- GAACCAAACUUCCCUCGAGG -5' 
Inhibition Type:Cleavage 
MDP0000253886 
Target:MDP0000308617 
Target Start:1089 
Target End:1108 
miRNA Aligned Fragment:5'-CUUGGACUGAAGGGAGCUCC-3' 
Target Aligned Fragment:3'- GAACCAAACUUCCCUCGAGG -5' 
Inhibition Type:Cleavage 
MDP0000308617 
Target:MDP0000162193 
Target Start:1039 
Target End:1059 
miRNA Aligned Fragment:5'-CUUGGACUGAAGGGAGCUCCC-3' 
Target Aligned Fragment:3'- GAACCUGACUUACCUUGGAGG -5' 
Inhibition Type:Cleavage 
MDP0000162193 
Target:MDP0000237596 
Target Start:101 
Target End:120 
miRNA Aligned Fragment:5'-CUUGGACUGAAGGGAGCUCC-3' 
Target Aligned Fragment:3'- GAACCUAGCUUACCUCGAGG -5' 
Inhibition Type:Cleavage 
MDP0000237596 
Target:MDP0000319634 
Target Start:587 
Target End:606 
miRNA Aligned Fragment:5'-CUUGGACUGAAGGGAGCUCC-3' 
Target Aligned Fragment:3'- GAACCUAGCUUACCUCGAGG -5' 
Inhibition Type:Cleavage 
MDP0000319634 
Target:MDP0000265425 
Target Start:418 
Target End:437 
miRNA Aligned Fragment:5'-CUUGGACUGAAGGGAGCUCC-3' 
Target Aligned Fragment:3'- GAACGUGACUUUCCUAGAGG -5' 
Inhibition Type:Cleavage 
MDP0000265425 
Target:MDP0000229368 
Target Start:798 
Target End:817 
miRNA Aligned Fragment:5'-CUUGGACUGAAGGGAGCUCC-3' 
Target Aligned Fragment:3'- GAACGUGACUUUCCUAGAGG -5' 
Inhibition Type:Cleavage 
MDP0000229368 
Target:MDP0000757833 
Target Start:43 
Target End:63 
miRNA Aligned Fragment:5'-UUGGACUGAAGGGAGCUCCUU-3' 
Target Aligned Fragment:3'- ACCUUGACUUCCUUUGAGGAG -5' 
Inhibition Type:Cleavage 
MDP0000757833 
Target:MDP0000205544 
Target Start:610 
Target End:629 
miRNA Aligned Fragment:5'-UUGGACUGAAGGGAGCUCCU-3' 
Target Aligned Fragment:3'- CACCUGAGUUCCCUCGAGGC -5' 
Inhibition Type:Cleavage 
MDP0000205544 
Target:MDP0000194772 
Target Start:312 
Target End:332 
miRNA Aligned Fragment:5'-UUGGACUGAAGGGAGCUCCUU-3' 
Target Aligned Fragment:3'- AACCUGACUUACUUCGGGUAA -5' 
Inhibition Type:Translation 
MDP0000194772 
Target:MDP0000296691 
Target Start:312 
Target End:332 
miRNA Aligned Fragment:5'-UUGGACUGAAGGGAGCUCCUU-3' 
Target Aligned Fragment:3'- AACCUGACUUACUUCGGGUAA -5' 
Inhibition Type:Translation 
MDP0000296691 
Target:MDP0000237553 
Target Start:298 
Target End:317 
miRNA Aligned Fragment:5'-UUGGACUGAAGGGAGCUCCU-3' 
Target Aligned Fragment:3'- AACCUGACUUCCCAGGGGGA -5' 
Inhibition Type:Cleavage 
MDP0000237553 
Target:MDP0000442611 
Target Start:841 
Target End:860 
miRNA Aligned Fragment:5'-UUGGACUGAAGGGAGCUCCU-3' 
Target Aligned Fragment:3'- GACCUGACUUCCCAUGGGGG -5' 
Inhibition Type:Cleavage 
MDP0000442611 
Target:MDP0000328318 
Target Start:988 
Target End:1007 
miRNA Aligned Fragment:5'-UUGGACUGAAGGGAGCUCCU-3' 
Target Aligned Fragment:3'- GACCUGACUUCCCAUGGGGG -5' 
Inhibition Type:Cleavage 
MDP0000328318 
Target:MDP0000287069 
Target Start:1180 
Target End:1199 
miRNA Aligned Fragment:5'-UUGGACUGAAGGGAGCUCCU-3' 
Target Aligned Fragment:3'- AACCUGACUUCCCAGGGGGA -5' 
Inhibition Type:Cleavage 
MDP0000287069 
Target:MDP0000763497 
Target Start:1186 
Target End:1205 
miRNA Aligned Fragment:5'-UUGGACUGAAGGGAGCUCCU-3' 
Target Aligned Fragment:3'- AACCUGACUUCCCAGGGGGA -5' 
Inhibition Type:Cleavage 
MDP0000763497 
Target:MDP0000927314 
Target Start:1186 
Target End:1205 
miRNA Aligned Fragment:5'-UUGGACUGAAGGGAGCUCCU-3' 
Target Aligned Fragment:3'- AACCUGACUUCCCAGGGGGA -5' 
Inhibition Type:Cleavage 
MDP0000927314 
Target:MDP0000920127 
Target Start:1186 
Target End:1205 
miRNA Aligned Fragment:5'-UUGGACUGAAGGGAGCUCCU-3' 
Target Aligned Fragment:3'- AACCUGACUUCCCAGGGGGA -5' 
Inhibition Type:Cleavage 
MDP0000920127 
Target:MDP0000168665 
Target Start:2649 
Target End:2668 
miRNA Aligned Fragment:5'-UUGGACUGAAGGGAGCUCCU-3' 
Target Aligned Fragment:3'- AGCCUGGCUUACCUUGGGGA -5' 
Inhibition Type:Translation 
MDP0000168665 
Data resource:
microPC
Wei et al.

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