AppleGFDB:The Apple Gene Function & Gene Family DataBase v1.0
Locus Search:

 

miR395a

miR395a  

Mature Sequence:5'-CTGAAGTGTTTGGGGGAACTCC-3'

Precursor Sequence:

ATACATCTGGAATCAGGTGTCCCCTAGAGTTCCCCCGAACACTTCATTAAGATCGATGCA
TAAGTTCTTTGTATATTAAATGATGATTGCACCATCTCTACTGAAGTGTTTGGGGGAACT
CCGGGTGTCATTTGATCATATCTCAACAAAACTGACTGGAGGTGATGGCTT

Genome Location:Chr13:4893657..4893678
Precursor Coordinates:174..345
MFE:-67.4
MFEI:0.94
GC:42.11
Plant Homologs:

aly-miR395b;aly-miR395g;aly-miR395c;aly-miR395f;aly-miR395d*;aly-miR395h;aly-miR395d;aly-miR395i;aly-miR395e;ath-miR395a;ath-miR395f;ath-miR395d;ath-miR395c;ath-miR395b;ath-miR395e;sly-miR395b;sly-miR395a;tae-miR395b;tae-miR395a;vvi-miR395c;vvi-miR395j;vvi-miR395k;vvi-miR395e;vvi-miR395a;vvi-miR395h;vvi-miR395g;vvi-miR395l;vvi-miR395f;vvi-miR395i;vvi-miR395m;vvi-miR395b;vvi-miR395d;csi-miR395;mtr-miR395e;mtr-miR395i;mtr-miR395q;mtr-miR395m;mtr-miR395d;mtr-miR395l;mtr-miR395h;mtr-miR395p;mtr-miR395a;mtr-miR395k;mtr-miR395b;mtr-miR395j;mtr-miR395o;mtr-miR395r;mtr-miR395n;mtr-miR395f;mtr-miR395g;mtr-miR395c;pab-miR395;rco-miR395e;rco-miR395d;rco-miR395b;rco-miR395c;rco-miR395a;zma-miR395b;zma-miR395f;zma-miR395e;zma-miR395i;zma-miR395m;zma-miR395p;zma-miR395j;zma-miR395o;zma-miR395g;zma-miR395a;zma-miR395n;zma-miR395d;zma-miR395c;zma-miR395l;zma-miR395h;osa-miR395i;osa-miR395h;osa-miR395p;osa-miR395k;osa-miR395d;osa-miR395j;osa-miR395q;osa-miR395e;osa-miR395l;osa-miR395s;osa-miR395m;osa-miR395b;osa-miR395t;osa-miR395f;osa-miR395n;osa-miR395a;osa-miR395o;osa-miR395g;osa-miR395c;osa-miR395r;ptc-miR395c;ptc-miR395j;ptc-miR395e;ptc-miR395g;ptc-miR395d;ptc-miR395h;ptc-miR395i;ptc-miR395f;ptc-miR395b;sbi-miR395a;sbi-miR395i;sbi-miR395k;sbi-miR395c;sbi-miR395e;sbi-miR395g;sbi-miR395h;sbi-miR395j;sbi-miR395d;sbi-miR395l;sbi-miR395f;sbi-miR395b;

Structure:
Target:MDP0000121656 
Target Start:334 
Target End:354 
miRNA Aligned Fragment:5'-CUGAAGUGUUUGGGGGAACUC-3' 
Target Aligned Fragment:3'- UACUUCUCAAACCUCCUUGAG -5' 
Inhibition Type:Cleavage 
MDP0000121656 
Target:MDP0000263161 
Target Start:1657 
Target End:1677 
miRNA Aligned Fragment:5'-CUGAAGUGUUUGGGGGAACUC-3' 
Target Aligned Fragment:3'- UACUUCUCAAACCUCCUUGAG -5' 
Inhibition Type:Cleavage 
MDP0000263161 
Target:MDP0000718765 
Target Start:609 
Target End:629 
miRNA Aligned Fragment:5'-CUGAAGUGUUUGGGGGAACUC-3' 
Target Aligned Fragment:3'- GGCUUCACGGACCCCCUCGAG -5' 
Inhibition Type:Cleavage 
MDP0000718765 
Target:MDP0000573746 
Target Start:609 
Target End:629 
miRNA Aligned Fragment:5'-CUGAAGUGUUUGGGGGAACUC-3' 
Target Aligned Fragment:3'- GGCUUCACGGACCCCCUCGAG -5' 
Inhibition Type:Cleavage 
MDP0000573746 
Target:MDP0000935996 
Target Start:315 
Target End:334 
miRNA Aligned Fragment:5'-CUGAAGUGUUUGGGGGAACU-3' 
Target Aligned Fragment:3'- AACUUCACAAAUCCUCUUGC -5' 
Inhibition Type:Cleavage 
MDP0000935996 
Target:MDP0000266051 
Target Start:1048 
Target End:1067 
miRNA Aligned Fragment:5'-CUGAAGUGUUUGGGGGAACU-3' 
Target Aligned Fragment:3'- UACUUCACGAACCUUUUUGA -5' 
Inhibition Type:Cleavage 
MDP0000266051 
Target:MDP0000295518 
Target Start:801 
Target End:820 
miRNA Aligned Fragment:5'-CUGAAGUGUUUGGGGGAACU-3' 
Target Aligned Fragment:3'- GACUUCWCAAACCUCCAUGU -5' 
Inhibition Type:Cleavage 
MDP0000295518 
Target:MDP0000718765 
Target Start:608 
Target End:629 
miRNA Aligned Fragment:5'-CUGAAGUGUUUGGGGGAACUCC-3' 
Target Aligned Fragment:3'- GGCUUCACGGACCCCCUCGAGG -5' 
Inhibition Type:Cleavage 
MDP0000718765 
Target:MDP0000573746 
Target Start:608 
Target End:629 
miRNA Aligned Fragment:5'-CUGAAGUGUUUGGGGGAACUCC-3' 
Target Aligned Fragment:3'- GGCUUCACGGACCCCCUCGAGG -5' 
Inhibition Type:Cleavage 
MDP0000573746 
Target:MDP0000121656 
Target Start:334 
Target End:354 
miRNA Aligned Fragment:5'-CUGAAGUGUUUGGGGGAACUC-3' 
Target Aligned Fragment:3'- UACUUCUCAAACCUCCUUGAG -5' 
Inhibition Type:Cleavage 
MDP0000121656 
Target:MDP0000263161 
Target Start:1657 
Target End:1677 
miRNA Aligned Fragment:5'-CUGAAGUGUUUGGGGGAACUC-3' 
Target Aligned Fragment:3'- UACUUCUCAAACCUCCUUGAG -5' 
Inhibition Type:Cleavage 
MDP0000263161 
Target:MDP0000935996 
Target Start:315 
Target End:334 
miRNA Aligned Fragment:5'-CUGAAGUGUUUGGGGGAACU-3' 
Target Aligned Fragment:3'- AACUUCACAAAUCCUCUUGC -5' 
Inhibition Type:Cleavage 
MDP0000935996 
Target:MDP0000266051 
Target Start:1048 
Target End:1067 
miRNA Aligned Fragment:5'-CUGAAGUGUUUGGGGGAACU-3' 
Target Aligned Fragment:3'- UACUUCACGAACCUUUUUGA -5' 
Inhibition Type:Cleavage 
MDP0000266051 
Data resource:
Wei et al.

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